Package ca.cas.painting

Provides classes for simulating chromosome painting.

See:
Description

Interface Summary

Paint

Interface encapsulates the behavior of the chromatin painting as a means of translating from the chromatin edges of an AbGraph to the Fragments of a Final Pattern.

Class Summary

Painter	This class stores a Paint and uses the methods of the Paint interface to determine Final Patterns from aberration multigraphs.
PaintFactory	Class contains static methods for building common Paints from Genomes.
WholeChromPaint	A whole chromosome Paint.

Package ca.cas.painting Description

Provides classes for simulating chromosome painting.