ca.cas.multigraph
Class AbVertex

java.lang.Object
  ca.cas.multigraph.AbVertex

All Implemented Interfaces:

java.lang.Comparable

public class AbVertex
extends java.lang.Object
implements java.lang.Comparable

This is the basic Vertex class in the AbGraph. Contains a type indicating telomere or free end, the chromosome to which it is associated and its location on that chromosome.

Field Summary

static int	FREE_END
static int	LEFT
static int	RIGHT
static int	TELOMERE

Constructor Summary

AbVertex(int type, long base_pair, int orient, Chromosome chrom)

Method Summary

int	compareTo(java.lang.Object o)
long	getBP()
Chromosome	getChrom()
long	getLocation()
int	getType()
int	orient()
java.lang.String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

TELOMERE

public static final int TELOMERE

See Also:

Constant Field Values

FREE_END

public static final int FREE_END

See Also:

Constant Field Values

LEFT

public static final int LEFT

See Also:

Constant Field Values

RIGHT

public static final int RIGHT

See Also:

Constant Field Values

Constructor Detail

AbVertex

public AbVertex(int type,
                long base_pair,
                int orient,
                Chromosome chrom)

Method Detail

getType

public int getType()

getChrom

public Chromosome getChrom()

getLocation

public long getLocation()

getBP

public long getBP()

orient

public int orient()

compareTo

public int compareTo(java.lang.Object o)

Specified by:

compareTo in interface java.lang.Comparable

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object