ca.cas.montecarlo
Class ExponentialMisrejoiner

java.lang.Object
  ca.cas.montecarlo.Misrejoiner
      ca.cas.montecarlo.ExponentialMisrejoiner

public class ExponentialMisrejoiner
extends Misrejoiner

ExponentialMisrejoiner extends Misrejoiner with the rule that the probability of two free ends joining decays exponentially with the distance between the two free ends in the Geometry

Field Summary

Fields inherited from class ca.cas.montecarlo.Misrejoiner

finalEdges, freeEnds, geo, grandSum, graph, probArray, size

Constructor Summary

ExponentialMisrejoiner(double decay)
Constructs an ExponentialMisrejoiner object.

Method Summary

protected void	initializeProbArray()
protected void	updateProbArray(int i, int j)

Methods inherited from class ca.cas.montecarlo.Misrejoiner

addEdgesToGraph, arrayIndexToChromosome, arrayIndexToLoc, getAllFinalEdges, getAndAddFinalEdges, initialize, misrejoin, setAbGraph, setGeometry

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ExponentialMisrejoiner

public ExponentialMisrejoiner(double decay)

Constructs an ExponentialMisrejoiner object.

Parameters:

decay - constant for the exponential falloff of probabilities

Method Detail

updateProbArray

protected void updateProbArray(int i,
                               int j)

Specified by:

updateProbArray in class Misrejoiner

initializeProbArray

protected void initializeProbArray()
                            throws java.lang.Exception

Specified by:

initializeProbArray in class Misrejoiner

Throws:

java.lang.Exception