Mihaescu, Radu and Pachter, Lior (2008). Combinatorics of least-squares trees. Proc. Natl. Acad. Sci. USA 105 No.36, 13206-13211. [MR] [GS?]
Eriksson, Nicholas and Pachter, Lior and Mitsuya, Yumi and Rhee, Soo-Yon and Wang, Chunlin and Gharizadeh, Baback and Ronaghi, Mostafa and Shafer, Robert W. and Beerenwinkel, Niko (2008). Viral population estimation using pyrosequencing. PLoS Comput. Biol. 4 No.5, e1000074, 13. [MR] [GS?]
Beerenwinkel, Niko and Pachter, Lior and Sturmfels, Bernd (2007). Epistasis and shapes of fitness landscapes. Statist. Sinica 17 No.4, 1317-1342. [MR] [GS?]
Huggins, Peter and Pachter, Lior and Sturmfels, Bernd (2007). Toward the human genotope. Bull. Math. Biol. 69 No.8, 2723-2735. [MR] [GS?]
Pachter, Lior (2007). An introduction to reconstructing ancestral genomes. In Modeling and simulation of biological networks Proc. Sympos. Appl. Math. 64 1-19 Amer. Math. Soc. Providence, RI. [MR] [GS?]
