UC Berkeley Applied Math Seminar
Organizers: Alexandre Chorin and Jon Wilkening
Amit Singer , Yale University
Tuesday, February 12
1015 Evans, 4-5 PM
Global Positioning from Local Distances
In many applications, the main goal is to obtain a global
low dimensional representation of the data, given some local
noisy geometric constraints. In this talk we will show
how all (seemingly unrelated) problems listed below can be
efficiently solved by constructing suitable operators on
their data and computing a few eigenvectors of sparse matrices
corresponding to the data operators.
- Cryo-Electron Microscopy for protein structuring:
- reconstructing the three-dimensional structure of a
molecule from projection images taken at random unknown orientations
(unlike classical tomography, where orientations are known).
- NMR spectroscopy for protein structuring:
- finding the global positioning of all hydrogen atoms in a molecule
from their local distances. Distances between neighboring hydrogen
atoms are estimated from the spectral lines corresponding to the
short ranged spin-spin interaction.
- Sensor Networks:
- finding the global positioning from noisy local distances.
- Numerical integration:
- surface reconstruction from noisy gradients.
Joint work with Ronald Coifman, Yoel Shkolnisky (Yale Applied
Math) and Fred Sigworth (Yale School of Medicine).