UC Berkeley Applied Math Seminar

Organizers: Alexandre Chorin and Jon Wilkening

Amit Singer , Yale University
Tuesday, February 12
1015 Evans, 4-5 PM
Global Positioning from Local Distances

In many applications, the main goal is to obtain a global low dimensional representation of the data, given some local noisy geometric constraints. In this talk we will show how all (seemingly unrelated) problems listed below can be efficiently solved by constructing suitable operators on their data and computing a few eigenvectors of sparse matrices corresponding to the data operators.

Cryo-Electron Microscopy for protein structuring:
reconstructing the three-dimensional structure of a molecule from projection images taken at random unknown orientations (unlike classical tomography, where orientations are known).
NMR spectroscopy for protein structuring:
finding the global positioning of all hydrogen atoms in a molecule from their local distances. Distances between neighboring hydrogen atoms are estimated from the spectral lines corresponding to the short ranged spin-spin interaction.
Sensor Networks:
finding the global positioning from noisy local distances.
Numerical integration:
surface reconstruction from noisy gradients.
Joint work with Ronald Coifman, Yoel Shkolnisky (Yale Applied Math) and Fred Sigworth (Yale School of Medicine).