Jon Wilkening's publications
Spectral measures and orthogonal polynomials
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C. L. Epstein and J. Wilkening,
Some analytic results for Kimura diffusion operators, Acta Mathematica Vietnamica,
45 (2020) 171-181.
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C. L. Epstein and J. Wilkening,
Eigenfunctions and the Dirichlet problem for the classical Kimura
diffusion operator, SIAM J. Applied Math, 77/1 (2017) 51-81.
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J. Wilkening and A. Cerfon,
A spectral transform method for singular Sturm-Liouville problems with applications
to energy diffusion in plasma physics, SIAM J. Appl. Math., 75/2 (2015) 350-392.
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J. Wilkening, A. Cerfon, and M. Landreman,
Accurate spectral numerical schemes for kinetic equations with energy diffusion,
J. Comput. Phys, 294 (2015) 58-77.
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J. Birrell, J. Wilkening and J. Rafelski,
Boltzmann equation solver adapted to emergent chemical non-equilibrium,
J. Comput. Phys., 281 (2015) 896-916.
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F. A. Grunbaum, L. Velazquez and J. Wilkening, Occupation time for classical and quantum walks, From Operator Theory to Orthogonal Polynomials, Combinatorics and Number Theory, Editors: Fritz Gesztesy and Andrei Martinez-Finkelshtein. Birkhauser (2021).
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J. Bourgain, F. A. Grunbaum, L. Velazquez and J. Wilkening,
Quantum recurrence of a subspace and operator-valued Schur functions, Comm. Math. Phys.,
329 (2014) 1031-1067.
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Water waves
- J. Wilkening and X. Zhao, Spatially quasi-periodic water waves of finite depth,
Proc R Soc A 479 (2023) 20230019:1-28,
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- J. Wilkening and X. Zhao, Spatially quasi-periodic bifurcations from periodic traveling
water waves and a method for detecting bifurcations using signed singular values,
J Comput Phys 478 (2023) 111954:1-34,
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- DM Ambrose, R Camassa, JL Marzuola, RM McLaughlin, Q Robinson and J. Wilkening,
Numerical algorithms for water waves with background flow over obstacles and
topography, Adv Comput Math 48 (2022) 46:1-62.
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- J. Wilkening, Traveling-standing water waves, Fluids, 6 (2021) 187:1-35.
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- J. Wilkening and X. Zhao, Spatially quasi-periodic water waves of
infinite depth, J. Nonlinear Sci., 31 (2021) 52:1-43.
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- J. Wilkening and X. Zhao, Quasi-periodic travelling gravity-capillary waves,
J. Fluid Mech., 915 (2021) A7:1-35.
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- J. Wilkening, Harmonic stability of standing water waves,
Quarterly of Applied Math, 78/2 (2020) 219-260.
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- C.H. Aurther, R. Granero-Belinchon, S. Shkoller and J. Wilkening,
Rigorous asymptotic models of water waves, Water Waves, 1 (2019) 71-130.
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O. Trichtchenko, B. Deconinck and J. Wilkening, The instability of Wilton ripples,
Wave Motion, 66 (2016) pp. 147-155.
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J. Wilkening, Relative-periodic elastic collisions of water waves, Contemp. Math., 635, (2015) 109-129.
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C. H. Rycroft and J. Wilkening, Computation of three-dimensional standing water
waves, J. Comput. Phys., 255 (2013) 612-638.
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J. Wilkening and J. Yu, Overdetermined shooting methods for computing standing
water waves with spectral accuracy, Comput. Sci. Disc. 5 (2012) 014017.
water2.pdf
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M. O. Williams, E. Shlizerman, J. Wilkening and J. N. Kutz, The low dimensionality
of time-periodic standing waves in water of finite and infinite depth,
SIAM J. Appl. Dyn. Syst., 11/3 (2012), 1033-1061.
water_pod.pdf
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Jon Wilkening, Breakdown of self-similarity at the crests of large amplitude
standing water waves, Phys. Rev. Lett, 107 (2011) 184501.
water1.pdf
Dirichlet to Neumann operators in fluid mechanics and materials science
- S. Qadeer and J. Wilkening, Computing the Dirichlet-Neumann operator on a
cylinder, SIAM J. Numer. Anal., 57/3 (2019) 1183-1204.
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J. Wilkening and V. Vasan, Comparison of five methods of computing the Dirichlet-Neumann operator
for the water wave problem, Contemp. Math., 635, (2015), 175-210.
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L. C. Lee, S. J. S. Morris and J. Wilkening, Stress concentrations, diffusionally-accommodated
grain boundary sliding and the viscoelasticity of polycrystals, Proc. Royal Soc. A, 467 (2011), pp. 1624-1644.
gb-sliding.pdf
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J. Wilkening, L. Borucki, J. A. Sethian, Analysis of stress-driven
grain boundary diffusion, part I, SIAM J. Appl. Math. 64/6 (2004),
pp. 1839-1863.
gb-diff1.pdf
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J. Wilkening, L. Borucki, J. A. Sethian, Analysis of stress-driven
grain boundary diffusion, part II: degeneracy, SIAM J. Appl. Math.
64/6 (2004), pp. 1864-1886. gb-diff2.pdf
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J. A. Sethian, J. Wilkening, A numerical model of stress driven
grain boundary diffusion, J. Comput. Phys., 193/1 (2004), pp. 275-305.
gb-num.pdf
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J. Wilkening, Mathematical Analysis and Numerical Simulation of
Electromigration, PhD thesis, University of California, Berkeley, May
2002.
wilkening-thesis.pdf
Time-periodic solutions of nonlinear partial differential equations and related topics
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M. J. Zahr, P.-O. Persson and J. Wilkening, A fully discrete adjoint method for optimization
of flow problems on deforming domains with time-periodicity constraints, Computers and Fluids, 139 (2016) 130-147.
arXiv:1512.00616
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Sanjay Govindjee, Trevor Potter and Jon Wilkening, Dynamic stability of spinning viscoelastic cylinders
at finite deformation, Int. J. Solids Struct. 51 (2014) 3589-3603.
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Sanjay Govindjee, Trevor Potter and Jon Wilkening, Cyclic steady states of treaded rolling bodies,
Int. J. Numer. Meth. Engng. 99 (2014) 203-220.
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M. O. Williams, J. Wilkening, E. Shlizerman and J. N. Kutz, Continuation of periodic solutions
in the waveguide array mode-locked laser, Physica D, 240/22 (2011), pp. 1791-1804.
laser.pdf
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David M. Ambrose and Jon Wilkening, Computation of symmetric, time-periodic
solutions of the vortex sheet with surface tension, Proc. Natl. Acad. Sci.,
107/8 (2010), pp. 3361-3366.
vtxs1.pdf
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David M. Ambrose and Jon Wilkening, Dependence of time-periodic vortex sheets with surface tension
on mean vortex sheet strength, Procedia IUTAM 11 (2014) 15-22.
vtxs2.pdf
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D.M. Ambrose and J. Wilkening. Computation of time-periodic solutions of nonlinear systems
of partial differential equations. Proceedings of Hyperbolic Problems: Theory, Numerics,
and Applications. Beijing, China, 2010. Higher Education Press, pp. 273-280, (2012).
vtxs3.pdf
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David M. Ambrose and Jon Wilkening, Computation of time-periodic
solutions of the
Benjamin-Ono equation, J. Nonlinear Sci., 20/3 (2010), pp. 277-308.
benj1.pdf
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David M. Ambrose and Jon Wilkening, Global paths of time-periodic solutions
of the Benjamin-Ono equation connecting pairs of traveling waves,
Comm. App. Math. and Comp. Sci., 4/1 (2009), pp. 177-215.
benj2.pdf
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Jon Wilkening, An infinite branching hierarchy of time-periodic
solutions of the Benjamin-Ono equation, arXiv:0811.4209.
benj3.pdf
Numerical Analysis / Micromagnetics
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E. Kim and J. Wilkening, Convergence of a mass-lumped finite element method
for the Landau-Lifshitz equation, Quarterly of Appl. Math., 76/2 (2018) pp. 383-405.
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Shape optimization, pipe network optimization, analysis of lubrication theory
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A. Lieb, C. H. Rycroft and J. Wilkening, Optimizing intermittent water supply
in urban pipe distribution networks, SIAM J. Appl. Math., 76/4, (2016), pp. 1492-1514.
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Jon Wilkening, Practical error estimates for Reynolds' lubrication
approximation and its higher order corrections,
SIAM J. Math. Anal., 41/2 (2009), pp. 588-630.
rle.pdf
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Jon Wilkening, Inf-sup estimates for the Stokes problem in a
periodic channel, arXiv:0706.4082.
infsup.pdf
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Jon Wilkening, A. E. Hosoi, Shape optimization of a sheet
swimming over a thin liquid layer,
J. Fluid Mech., 601 (2008), pp. 25-61.
snail.pdf
Implicit sampling using adjoint methods
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X. Tu, M. Morzfeld, J. Wilkening and A. Chorin, Parameter estimation by
implicit sampling, Comm. App. Math. and Comp. Sci., 10/2 (2015), pp. 205-225.
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Optimal transportation and geodesic flows in the Wasserstein metric
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Michael Westdickenberg and Jon Wilkening, Variational particle scheme for
the porous medium equation and for the system of isentropic Euler equations,
ESAIM-Math. Model. Num., 44 (2010), pp. 133-166.
VarScheme.pdf
Matrix factorizations and canonical forms
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Jon Wilkening and Jia Yu, A local construction of the Smith normal
form of a matrix polynomial,
J. Symbolic Comput., 46 (2011), pp. 1-22.
smith.pdf
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J. Wilkening, An algorithm for computing Jordan chains and inverting
analytic matrix functions, Linear Algebra Appl., 427/1 (2007), pp. 6-25.
Achain.pdf