MCB 247 Homepage, Spring 2009.
Genome Project Laboratory
Lectures: Tuesdays and Thursdays, 1:00pm-5:00pm in 2032/2038 VLSB.
Course Control Number: 59713
Links
Illumina Genome Analyzer System
BioPerl
Unix introduction and quick reference
VI tutorial
Emacs tutorial
Slides
Sequence assembly
Gene finding
Read mapping with Bowtie
References
A. Fleming: On the antibacterial action of cultures of a Penicillum, with special reference to their use in the isolation of B. influenzae
M.A. van den Berg et al.: Genome sequencing and analysis of the filamentous fungus Penicillum chrysogenum
Software
Velvet sequence assembler
BowTie read mapper
SNAP gene finder, ZFF format
Exonerate alignment and gene prediction.
JIGSAW annotation system